In the year 2059, the earth has been plagued by aliens for several years. In an effort to learn more about these aliens, Dr. Noguchi and his assistants Maki Agata and Takuto Kaneshiro try to revive the professor's experiment, a large Bio-Mechanical alien named Frank. During this process the alien comes to 'life' and the lab is subsequently destroyed leaving Takuto the only survivor and the alien disappearing into the wilderness. While Frank roams the wilderness he meets Hattie, an emotionally distressed young girl whose parents are killed in the first 'close encounter' war. Oddly enough she is able to communicate with Frank and soon after they are taken into custody by a secret agency known only as 'Funeral'. Meanwhile, Takuto wakes up in a hospital bed with his life in shambles, and his face disfigured. Motivated by vengeance and heart break, Takuto accepts an offer from the mysterious 'Mr. X' and receives a new identity as a ranking Funeral officer named Ryu Soma. (Source: ANN)

Once upon a time, a race known as the Shadow Angels attacked Earth to harvest the life force of all those who inhabited the planet. Thanks to some outrageous miracle, the Shadow Angels went dormant, and humanity was able to live another 12,000 years without fearing their presence. But 11 years after a catastrophe dubbed the Holy Genesis brought ruin to the Earth, the Shadow Angels were stirred from their slumber and resumed the attacks once more. To give humanity somewhat of a chance, an organization known as DEAVA was formed, and use of a robotic weapon named Aquarion has been authorized. In order for the Aquarion to be brought to full power, three pilots must combine their hearts, bodies, and souls into one—a feat few can hope to accomplish. Thus, the search for so-called 'Element Users' was prioritised, hoping to ensure humanity's future. Sousei no Aquarion follows the story of Apollo, a near-feral young man brought up in poverty, who is believed to be a legendary hero reincarnated. After his best friend is taken by the Shadow Angels, Apollo chooses to become an Aquarion pilot. Will he be able to turn the tides of the war, and free humanity from the threat of the Shadow Angels for once and for all?

Li Meifon is the head of a free, no expenses paid protection/security agency for escorting ships across outer space. Though only 16, she posesses great skill and leadership qualities while commanding her crew aboard their ship, the "Angel Links." However, some unpleasant memories begin to trouble her and she starts questioning her own past and reason for existence. Join Li Meifon and the rest of the Angel Links crew on their adventures through the Oracion star system as they battle pirates, government organizations, and a Tao master, all while finally uncovering Meifon's dark and mysterious past.

For their silver anniversary, Vanilla and Coconna return to Uoodo along with Gotho in the hopes of reuniting with Chirico. Once there they find a red shouldered AT at the Battling arena.