Third season of .

Five years ago, Musashi made a promise with his friend Kojirou Kanemaki that once they grew up, they would become samurai, form a league, and go on demon-slaying quests. But since then, things have changed. With demons now being praised and worshipped by society, the samurai are shunned and disgraced. Afraid of revealing his dream of becoming a samurai, Musashi blends into the town's dogma by becoming a miner while secretly polishing his swordsmanship. Meanwhile, despite being a direct descendant of a samurai, Kojirou gives up on his promise to his old friend. However, after saving Musashi from a near-death experience, his perspective shifts. Although still conflicted, Kojirou embarks on a journey with Musashi in the hopes of figuring out his true feelings. Fighting against all odds, the duo dives headfirst into the unknown world of beast-slaying, not knowing what life has in store for them. Now astride iron horses, the fifteen-year-old heroes plan to restore the tarnished reputation of the samurai and purge the world of demons.

The world of Duel Monsters is once again evolving with the development of a network called Link Vrains and a new summoning mechanic introduced as Link Summoning. By using this cyberspace, duelists can now create their own avatars and duel their way to glory within a virtual reality. However, much like the real world, the digital world is not free from war, conflict, and mysteries. Years ago, a hacker organization known as the Knights of Hanoi unleashed an attack on Link Vrains. Led by the anonymous Revolver, their aim was to annihilate the artificial intelligence program known as the Cyberse. After a failed attempt, one of their targets, Ignis, managed to escape and hide the Cyberse somewhere in the network. Five years later, high school student Yuusaku Fujiki encounters a strange artificial intelligence program while dueling in Link Vrains. Under the guise of his avatar named Playmaker, Yuusaku and his partner in crime, Shouichi Kusanagi, decide to join forces with the peculiar existence. As he seeks the truth behind a mysterious incident of the past, Yuusaku battles against the Knights of Hanoi and SOL Technologies in a race that might alter the fate of the world.