At the millennial edge, the concluding battle for humanity's future is staged. Kamui Shirou's destiny has been decided as he returns to Tokyo to face his ultimate challenge. The Dragon of Heaven, defenders of the Earth, stand ready to protect the world from the Dragon of Earth, the seven angels of legend, who embrace the devastation of the planet to bring about its purification. Now Kamui must decide which side to fight for although he finds the idea utterly unappealing. It isn't until realizing that his two childhood friends, Fuma and Kotori Monou, are in grievous peril that Kamui decides to step into his fated position in the climactic struggle of the Year of Destiny: 1999.

Anubis, an ancient Egyptian evil that was defeated by Yugi's alter ego centuries ago, has returned to exact revenge. Wielding the power of the Eighth Millennium Item, Anubis is determined to destroy Yugi and take over the world.

Kouji and his friends have defeated Dr. Hell and are now enjoying a break, but suddenly a strange prophet appears and warns everyone of an oncoming danger, mechanical beasts never seen before start appearing all around the world wrecking havoc. Its up to Kouji and his Mazinger Z to stand up to this threat but it seems he is vastly outnumber and outmatched.

This film served as an alternative link between the Mazinger Z TV series and the Great Mazinger TV series. It basically introduces Great Mazinger to the audience, as well as his enemies from the Mikene Empire.

Shortly after winning the World Martial Arts Tournament and using the winnings to pay off her grandfather's one hundred million yen debt, a reporter shows up on Kizuna Todoroki's doorstep. Impressed that such a young girl was able to defeat the 10-year reigning champion, the reporter wants to interview Kizuna for a piece on her and the Wadachi Ju-ken school of martial arts founded by Kizuna's grandfather. However, before the interview can end, challengers begin to appear at the Todoroki household. After hearing that Kizuna is only 12, they hope to defeat her before her 13th birthday to usurp her position as the world champion. As dozens of challengers appear, Kizuna struggles to bring them all down, while the reporter learns more about the Todoroki family.