Nicholas Brown and Worick Arcangelo, known in the city of Ergastalum as the "Handymen," are mercenaries for hire who take on jobs no one else can handle. Contracted by powerful mob syndicates and police alike, the Handymen have to be ready and willing for anything. After completing the order of killing a local pimp, the Handymen add Alex Benedetto—a prostitute also designated for elimination—to their ranks to protect her from forces that want her gone from the decrepit hellhole of a city she has come to call home. However, this criminal’s paradise is undergoing a profound period of change that threatens to corrode the delicate balance of power. Ergastalum was once a safe haven for "Twilights," super-human beings born as the result of a special drug but are now being hunted down by a fierce underground organization. This new threat is rising up to challenge everything the city stands for, and the Handymen will not be able to avoid this coming war. [Written by MAL Rewrite]

In the not so distant future, mankind has advanced to a state where complete body transplants from flesh to machine is possible. This allows for great increases in both physical and cybernetic prowess and blurring the lines between the two worlds. However, criminals can also make full use of such technology, leading to new and sometimes, very dangerous crimes. In response to such innovative new methods, the Japanese Government has established Section 9, an independently operating police unit which deals with such highly sensitive crimes. Led by Daisuke Aramaki and Motoko Kusanagi, Section 9 deals with such crimes over the entire social spectrum, usually with success. However, when faced with a new A level hacker nicknamed "The Laughing Man," the team is thrown into a dangerous cat and mouse game, following the hacker's trail as it leaves its mark on Japan. [Written by MAL Rewrite]

Following the closure of the "Laughing Man" case, Section 9 is re-established by Japan's newly elected Prime Minister, Youko Kayabuki, to combat the persistent threat of cyber-terrorism. A group calling themselves "The Individual Eleven" has begun committing acts of terror across Japan. While Motoko Kusanagi, Daisuke Aramaki, Batou, and the other members of Section 9 investigate this new menace, the Japanese government faces a separate crisis, as foreign refugees displaced by the Third World War seek asylum in Japan. But as the members of the special-ops team continually encounter Gouda Kazundo—a leading member of the Cabinet Intelligence Service—in their hunt, they begin to suspect that he may be involved, and that the events of the refugee crisis and The Individual Eleven may be more connected than they realize... [Written by MAL Rewrite]

Tachikomatic Days is a series of comedic shorts attached to the end of every episode of Ghost in the Shell: Stand Alone Complex. The shorts feature the antics of the Tachikoma think tanks of Section 9 and usually involve plot points. The average short time is a little over a minute.