During the summer of her freshman year of high school, Yuzu Aihara's mother remarried, forcing her to transfer to a new school. To a fashionable socialite like Yuzu, this inconvenient event is just another opportunity to make new friends, fall in love, and finally experience a first kiss. Unfortunately, Yuzu's dreams and style do not conform with her new ultrastrict, all-girls school, filled with obedient shut-ins and overachieving grade-skippers. Her gaudy appearance manages to grab the attention of Mei Aihara, the beautiful and imposing student council president, who immediately proceeds to sensually caress Yuzu's body in an effort to confiscate her cellphone. Thoroughly exhausted from her first day, Yuzu arrives home and discovers a shocking truth—Mei is actually her new step-sister! Though Yuzu initially tries to be friendly with her, Mei's cold shoulder routine forces Yuzu to begin teasing her. But before Yuzu can finish her sentence, Mei forces her to the ground and kisses her, with Yuzu desperately trying to break free. Once done, Mei storms out of the room, leaving Yuzu to ponder the true nature of her first kiss, and the secrets behind the tortured expression in the eyes of her new sister. [Written by MAL Rewrite]

With the initiation of the Patrian civil war came the creation of half-beast, half-human soldiers—a development of the outnumbered Northerners in a desperate attempt to counter the overwhelming Southern forces. Able to quickly dominate battlefields and achieve victory with ease, the soldiers' godlike abilities earned them the name "Incarnates." However, as the war raged on, the Incarnates encountered a problem involving the beasts inside them that they were unable to rectify by ordinary means. Once the war was over, mysteries and accounts of the Incarnates submitting to the misfortune of their war days surfaced. Aware of the horrors they faced during the war, Special Sergeant Major and former captain of the Incarnates Hank Henriette becomes a Beast Hunter—those who take the lives of Incarnates who have succumbed to the issues they experienced on the battlefields. After witnessing her father, a former Incarnate soldier, meet his end at the hands of one such Beast Hunter, Nancy Schaal Bancroft resolves to hunt the man who took her father's life. However, Nancy's eye-opening encounter with the Beast Hunter influences her to instead seek the reason behind her father's death and the Incarnates' problematic existence in society. [Written by MAL Rewrite]

Short 3D CG Specials included in the Blu-rays of the Ghost in the Shell: Arise movies.

Hundreds of years after the 20th century, nature and the ecosystem have been devastated due to use of nuclear and biological weapons. Most of the Earth has been contaminated and is collapsing into ruin, and a great majority of plants and animals are now extinct. The world heads to the "Big Six," the sixth mass extinction event. Humanity built cities in the sky, migrating the endangered species of animals and plants there. Over many years, the animals evolved in these isolated cities. With artificial genetic crossbreeding, they acquire language, bipedality, and build a life and civilization for themselves free from want. No one thinks of the world below any longer. One day, a single plant seed wanders into one of the sky cities, and the children Kui, Hiruma, and Root discover it. Unable to resist the temptation to look into the world outside, they decide to undertake an adventure to the outside world, unknowing that once they set foot on the ground, they will never be able to return.