Fleeing from his own race, Orgun—an alien being with superhuman abilities and unearthly weapons—travels to Earth to find an answer to his origin. There, he bonds with a young man named Tomoru to defend Earth against the Evoluders, who seek nothing but destruction of other civilizations.

Chika Homura begins her high school career with a goal: to develop a "cute girl" persona. After quitting the volleyball team despite her all-star status, Chika decides to join her school's underrated Wind Instrument Club and play the flute, believing it to be the most delicate and feminine instrument. For the first time in nine years, Chika reunites with her childhood friend and total opposite, Haruta Kamijou. Unfortunately for Chika, Haruta is not fooled by her efforts to become more endearing. But this does not deter Chika, and she develops a crush on the band instructor, Shinjirou Kusakabe—but so does Haruta! However, Chika's high school life just won't go according to plan, as mysteries begin appearing around her and her friends. The club members must work together to solve the mysteries plaguing the school, all while trying to find more members to compete in musical competitions. [Written by MAL Rewrite]

In a future governed through the lens of a camera, where people eat synthetic food and pursue an online existence in lieu of physical contact, a group of children begin meeting up in the real world. The aloof Ayumi Kono, the genius hacker Mio Tsuzuki, and the socially awkward Hazuki Makino set out to find the fourth member of their group, Yuko Yabe, who has gone missing. With the help of Myao Rei, an unregistered citizen proficient in martial arts, they are able to find Yuko. However, when their situation takes a sudden turn for the worse, the group stumbles headlong into a dark mystery that challenges everything they know about their world.

The film takes place on a certain isolated island, at a certain middle school, and on the eve of the culture festival. A boy quits baseball after playing his whole life and has a fight with his best friend. Then, they suddenly meet a mysterious, red-eyed girl named Noruda, and a huge typhoon hits the middle school.