Five supernatural factions have been fighting against each other for who knows how many centuries, with the beginning of Aquarian Age always in mind. Kyouta, soon begins to see visions of mystical girls fighting, except they do exist. Soon he and his girlfriend Yoriko become involved and the battle for Earth and Aquarian Age lies in their hands.

Yakumo has trained and searched for 4 years, following Pai's mysterious disappearance. However, when he finally finds her, not all is well as her memory seems to be gone. They attempt to return her memory by going to the Holy Land, birthplace of the immortal race of Sanjiyans.

Three sisters, Hozuki, Kazuki, and Hazuki, are descendants of Galileo and have completely different personalities and tastes; they never meet eye-to-eye. One day, the girls are suddenly attacked by a mysterious organization. The organization was after the "Galileo Tesoro" which Galileo Galilei was said to have discovered. Still unaware of what was going on, the sisters escape on the airship they built after the sudden attack. But it won't be so easy for these three sisters to help each other out in a pinch when they're constantly at odds with each other. What is the Tesoro, and what is the organization after? And what about the relationship between the sisters? It's a threesome of cute girls, action, and mystery!

A few young girls with strange powers and a tree that has grown through a railcar cling onto life in a desolate land, searching for its last reservoirs of water. Their routine struggle to survive is interrupted by the arrival of Wakaba, a boy with no memory beyond his own name. The girls and their new companion commit to a perilous journey across seas of burning red fog—all in order to find what they need to sustain themselves on the more distant, dangerous islands swarming with robotic bugs. Their ultimate fate will be decided by their own strength, along with Wakaba's curious ability to understand the Kemurikusa: mysterious glowing leaves with wondrous powers. Besides the girls, Wakaba, and the hordes of ravenous bugs, the Kemurikusa are the last sparks of life surviving in this land. How did things end up this way? Why are there so many empty buildings with no one to live in them? Wakaba and the girls lack the answers to these questions, which means the truth can only be found within the Kemurikusa. [Written by MAL Rewrite]