—Do you know the Nejen? If you know it, then I'll take you there— The year is U.C. 0105. Twelve years have passed since the end of the second Neo Zeon War (Char's Rebellion). Even after "the Axis Shock," which seemed to indicate the future of humanity and the Universal Century, the world is still in a chaotic situation where intermittent military conflicts continue to break out. The Earth Federation government is more corrupt than ever, and its leadership has not only accelerated Earth's pollution, but also implemented an inhuman "Man Hunting" policy in which civilians are forcibly exiled to outer space. The anti-Federation government organization "Mafty," led by someone called "Mafty Navue Erin," has taken a stand against the corruption of the Earth Sphere. Mafty carries out fierce acts of terrorism, assassinating high officials of the Federation government one after another, but it gains a certain level of support from the populace who are growing more opposed to the Federation government. The person who calls himself "Mafty" and leads this organization is Hathaway Noa, the son of Bright Noa, an officer of the Earth Federation Forces who once participated in the One Year War. Hathaway himself joined the forces trying to stop Char’s Rebellion. With firsthand knowledge of the ideals and ideologies of Amuro Ray and Char Aznable, he has become a warrior following in their footsteps, and plans to clear a path forward through armed resistance. His destiny, however, is drastically altered as he encounters the Federation Forces officer Kenneth Sleg and a mysterious young beauty named Gigi Andalucia. (Source: Gundam.info)

The tests have come, and Keitaro can only hope to succeed. However, in the final stretch, he fails miserably and daydreams through the test. Assuming that he has failed, he runs away, so the rest of the cast hunts him down on a remote desert island to bring him back. The Toudai entrance exams have finally come (again) for Keitaro. With all his confidence Keitaro sits for the paper, but ends up falling asleep and dreaming about Narusegawa. Waking up with barely any time to complete the paper, Keitaro thinks he will fail the paper and tries to escape from Hinata Lodge and forget all the memories with it. By a stroke of luck he meets Seta, but ends up in a faraway island with the whole cast trying to look for him. (Source: ANN)

The ordinary life of high school student Ayato Kamina is turned upside down when Tokyo is suddenly invaded by futuristic fighter jets. Amidst the chaos, he encounters a woman called Haruka Shitow who claims to be from a government organization called TERRA. She reveals that he has been living in a time bubble named "Tokyo Jupiter" that was put in place by the Mulians—humanoids from another dimension—in an attempt to isolate and take over Tokyo. TERRA has been trying to break through the barrier surrounding the city ever since. Unable to process the revelation, Ayato panics and flees. He runs into his classmate Reika Mishima who leads him to a place called "The Shrine of Xephon" where a large egg slumbers. She starts to sing and an unknown power awakens within Ayato, connecting him to a being called RahXephon that breaks out of the egg. Shortly after, Haruka finds him again and tries to make him join her cause of fighting against the Mulians. Caught between the crosshairs of the Mulians and TERRA, Ayato begins to question his purpose, navigating altered memories and ultimately his very identity in this chaotic new world. [Written by MAL Rewrite]

Syaoran, Sakura, Kurogane, Fai and Mokona's journey through to different world's continue as they search for Sakura's feathers. The fated journey slowly becomes more complicated for our travelers, as they find themselves diving deeper into more dangerous worlds. Takes place immediately after the first season. Based on the manga by CLAMP.